Job ID: 256160815
Job date: 2017-05-01
End Date:
Company : The Jackson Laboratory Country : Role : Technician
Job date: 2017-05-01
End Date:
Company : The Jackson Laboratory Country : Role : Technician
Job Description:
The position involves the development of software and resources for the Human Phenotype Ontology project (HPO; www.human-phenotype-ontology.org), which is a major resource of the Monarch Initiative (monarchinitiative.org). Current focus areas include databases and resources for phenotype-driven genomic analysis in rare and common disease. Cross species analysis is a crucial component of the planned research. The position is located on the Farmington, CT JAX campus. Job responsibilities will include Interaction with and participation in Mouse Genome Informatics (MGI) and Mammalian Phenotype Ontology (MPO) activities – the work will contribute to ongoing activities in cross-species phenotype analysis. For this reason, job activities will involve a roughly annual trip to the Bar Harbor, ME, JAX campus. The position requires a highly skilled software engineer. The successful candidate will thrive in a rapidly changing technology landscape in which it is required to learn new technologies to solve current scientific problems on the job without formal training. The incumbent will have working familiarity with a majority of the following technologies: Java, PostgreSQL or other significant DB experience, and web application development experience. Domain knowledge in bioinformatics is also required, particularly in functional genomics, sequence interpretation and genomic database interpretation. Experience using neo4j, JSF, HTML 5, Javascript, XML/JSON, MySQL, and associated frameworks and libraries such as Java RichFaces, and D3 would be considered a plus. Prior experience in web and user interface development is required. This position requires a high level of interest in genomics science and desire to learn about the science beyond what might be strictly necessary to write the program code. Passing a test in basic human genetics and/or passing a basic genetics course offered by The Jackson Laboratory is required. The successful candidate will be comfortable working in a distributed software development environment in which daily communication, interaction, and sharing of ideas with peers and clients are essential for success. KEY RESPONSIBILITIES -Codes, documents, and tests programs, often based on design specifications. Does software maintenance (e.g. corrects software bugs and implements enhancements). -Participates in the design of software with other software professionals to include database design, structured design, object oriented design, component design, API design, etc. -Participates in requirements analysis with other software professionals and domain users/experts including gathering and analyzing user and system requirements, data modeling, user interface design, work process modeling, etc. Assists in project management activities such as project definition and systems planning, defining task breakdowns, estimating task durations. -Participates in the development, maintenance, and review of technical and user documentation of software intensive systems including but not limited to design documentation, requirements documentation, and user documentation. -Assists in software administration activities as assigned such as configuration management, software installations, software tool administration, research, and monitoring. MINIMUM QUALIFICATIONS -Level III: The incumbent must have at least 5 years’ experience and a BS degree in computer science or bioinformatics, or significant prior work experience in writing programs for scientific research to offset the lack of degree. -Required skills include Java, PostgreSQL or other significant DB experience, and web application development experience. -Domain knowledge in bioinformatics required, particularly in functional genomics, sequence interpretation and genomic database interpretation. -Experience in identifying and developing software applications in the biomedical sciences and/or bioinformatics and implementing algorithms for analyzing large scale scientific data, e.g., Next Generation Sequencing data (NGS). -Ability to write and maintain effective technical documentation and program documentation. -Ability to communicate clearly and effectively verbally and in writing; and with people representing diverse degrees of training, education, English language skill and sophistication. -Ability to adapt to new platforms, programming languages, tools and applications as required by project needs. -Ability to learn and follow software engineering processes, procedures and standards. -Ability to develop and recommend solutions to complex problems often under time constraints. -Ability to handle multiple tasks/projects at the same time and complete projects successfully and on time.
Additional Info:
About JAX-GM: Comprising 183,000 square feet of highly advanced, state-of-the-art laboratories and supporting facilities, the brand new JAX-GM conveniently sits midway between NYC and Boston in the heart of Connecticut. JAX-GM is part of an exciting $1.1 billion venture between the state of Connecticut and The Jackson Laboratory, an internationally-recognized research and educational institution. MORE ABOUT JAX JAX began in 1929 with a small group of scientists dedicated to the emerging field of genetics. We now have over 1,700 scientists, technicians, and support staff, including over 50 Principle Investigators in five primary disease areas: cancer, reproductive biology, immunology, metabolic processes and neuroscience. Our fundamental contributions to biomedical research include cancer genetics and establishing the mouse as the premier research animal model. -Uncover more of our historic milestones, including the 26 Nobel prizes associated with our research, resources, and education -Read our latest news & insights for a glimpse at how we’re impacting the future of biomedicine -Follow the progress we’re making on our quest to improve human health via our recent research highlights EEO: All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, national origin, disability or protected veteran status.[Click Here to Access the Original Job Post]
The position involves the development of software and resources for the Human Phenotype Ontology project (HPO; www.human-phenotype-ontology.org), which is a major resource of the Monarch Initiative (monarchinitiative.org). Current focus areas include databases and resources for phenotype-driven genomic analysis in rare and common disease. Cross species analysis is a crucial component of the planned research. The position is located on the Farmington, CT JAX campus. Job responsibilities will include Interaction with and participation in Mouse Genome Informatics (MGI) and Mammalian Phenotype Ontology (MPO) activities – the work will contribute to ongoing activities in cross-species phenotype analysis. For this reason, job activities will involve a roughly annual trip to the Bar Harbor, ME, JAX campus. The position requires a highly skilled software engineer. The successful candidate will thrive in a rapidly changing technology landscape in which it is required to learn new technologies to solve current scientific problems on the job without formal training. The incumbent will have working familiarity with a majority of the following technologies: Java, PostgreSQL or other significant DB experience, and web application development experience. Domain knowledge in bioinformatics is also required, particularly in functional genomics, sequence interpretation and genomic database interpretation. Experience using neo4j, JSF, HTML 5, Javascript, XML/JSON, MySQL, and associated frameworks and libraries such as Java RichFaces, and D3 would be considered a plus. Prior experience in web and user interface development is required. This position requires a high level of interest in genomics science and desire to learn about the science beyond what might be strictly necessary to write the program code. Passing a test in basic human genetics and/or passing a basic genetics course offered by The Jackson Laboratory is required. The successful candidate will be comfortable working in a distributed software development environment in which daily communication, interaction, and sharing of ideas with peers and clients are essential for success. KEY RESPONSIBILITIES -Codes, documents, and tests programs, often based on design specifications. Does software maintenance (e.g. corrects software bugs and implements enhancements). -Participates in the design of software with other software professionals to include database design, structured design, object oriented design, component design, API design, etc. -Participates in requirements analysis with other software professionals and domain users/experts including gathering and analyzing user and system requirements, data modeling, user interface design, work process modeling, etc. Assists in project management activities such as project definition and systems planning, defining task breakdowns, estimating task durations. -Participates in the development, maintenance, and review of technical and user documentation of software intensive systems including but not limited to design documentation, requirements documentation, and user documentation. -Assists in software administration activities as assigned such as configuration management, software installations, software tool administration, research, and monitoring. MINIMUM QUALIFICATIONS -Level III: The incumbent must have at least 5 years’ experience and a BS degree in computer science or bioinformatics, or significant prior work experience in writing programs for scientific research to offset the lack of degree. -Required skills include Java, PostgreSQL or other significant DB experience, and web application development experience. -Domain knowledge in bioinformatics required, particularly in functional genomics, sequence interpretation and genomic database interpretation. -Experience in identifying and developing software applications in the biomedical sciences and/or bioinformatics and implementing algorithms for analyzing large scale scientific data, e.g., Next Generation Sequencing data (NGS). -Ability to write and maintain effective technical documentation and program documentation. -Ability to communicate clearly and effectively verbally and in writing; and with people representing diverse degrees of training, education, English language skill and sophistication. -Ability to adapt to new platforms, programming languages, tools and applications as required by project needs. -Ability to learn and follow software engineering processes, procedures and standards. -Ability to develop and recommend solutions to complex problems often under time constraints. -Ability to handle multiple tasks/projects at the same time and complete projects successfully and on time.
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Additional Info:
About JAX-GM: Comprising 183,000 square feet of highly advanced, state-of-the-art laboratories and supporting facilities, the brand new JAX-GM conveniently sits midway between NYC and Boston in the heart of Connecticut. JAX-GM is part of an exciting $1.1 billion venture between the state of Connecticut and The Jackson Laboratory, an internationally-recognized research and educational institution. MORE ABOUT JAX JAX began in 1929 with a small group of scientists dedicated to the emerging field of genetics. We now have over 1,700 scientists, technicians, and support staff, including over 50 Principle Investigators in five primary disease areas: cancer, reproductive biology, immunology, metabolic processes and neuroscience. Our fundamental contributions to biomedical research include cancer genetics and establishing the mouse as the premier research animal model. -Uncover more of our historic milestones, including the 26 Nobel prizes associated with our research, resources, and education -Read our latest news & insights for a glimpse at how we’re impacting the future of biomedicine -Follow the progress we’re making on our quest to improve human health via our recent research highlights EEO: All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, national origin, disability or protected veteran status.[Click Here to Access the Original Job Post]