Top 50 Bioinformatics Websites
- NCBI (National Center for Biotechnology Information) – A central hub for genomic and biomedical research.
- Ensembl – A genome browser for vertebrates and model organisms.
- UCSC Genome Browser – A widely used genome exploration platform.
- EBI (European Bioinformatics Institute) – Provides various bioinformatics tools and databases.
- GENCODE – Offers high-quality gene annotation for human and mouse genomes.
- UniProt – A comprehensive protein sequence and functional information database.
- PDB (Protein Data Bank) – A 3D structure repository for biomolecules.
- AlphaFold Protein Structure Database – AI-generated protein structures from DeepMind.
- STRING – A database of known and predicted protein-protein interactions.
- InterPro – A classification system for protein families.
- GATK (Genome Analysis Toolkit) – A toolkit for variant discovery in sequencing data.
- SRA (Sequence Read Archive) – A repository of raw sequencing data.
- dbSNP – A database of single nucleotide polymorphisms (SNPs).
- 1000 Genomes Project – A global reference for human genetic variation.
- ClinVar – A database of clinically significant genetic variations.
- GEO (Gene Expression Omnibus) – A repository for gene expression data.
- ArrayExpress – A functional genomics data repository.
- GTEx – Provides insights into gene expression across human tissues.
- BioGPS – A gene annotation and expression database.
- Expression Atlas – Information on differential gene expression across conditions.
- KEGG – A pathway database for understanding biological systems.
- Reactome – A curated biological pathway database.
- BioCyc – Provides metabolic pathway information.
- WikiPathways – A community-curated pathway database.
- PANTHER – A protein classification and pathway database
- QIIME 2 – A tool for microbiome analysis.
- HMP (Human Microbiome Project) – Studies the role of microbes in human health.
- IMG/M – An integrated metagenomics database.
- Silva – A comprehensive ribosomal RNA sequence database.
- Tree of Life – Evolutionary relationships between species.
- OrthoDB – A database of orthologous genes.
- PAML – A phylogenetic analysis tool.
- PhylomeDB – A database of gene phylogenies.
- MAFFT – A multiple sequence alignment tool.
- Bioconductor – An open-source bioinformatics project for R.
- Galaxy Project – A web-based bioinformatics platform.
- Cytoscape – A network analysis tool for biological data.
- Wiki List of open-source bioinformatics software
