Job Description:
We are looking for a bioinformatician to integrate value-added information on enzymes and catalytic binding sites with the PDB structure data and make it available programmatically and via PDBe website. The tasks for this post include:
Additional Info:
Contract Duration: 2 years and 4 months Grading: 5 (monthly salary starting at £2,507 after tax). The Protein Data Bank in Europe Team (PDBe; pdbe.org) is part of the worldwide Protein Data Bank organisation (wwPDB; wwpdb.org), which maintains the global archive of structural data on biomacromolecules - the PDB. The PDBe Team also maintains a number of databases that support deposition and advanced search services for structural biologists and the wider scientific community. The Team consists of an international and inter-disciplinary mix of professionals: scientists, software engineers, and database engineers. The PDBe and CS3DB teams form the Molecular and Cellular Structure cluster within the EBI. [Click Here to Access the Original Job Post]
We are looking for a bioinformatician to integrate value-added information on enzymes and catalytic binding sites with the PDB structure data and make it available programmatically and via PDBe website. The tasks for this post include:
- to identify the data that will be integrated into PDBe infrastructure and define formats and ontologies for its standardisation
- to design and develop a process for data integration
- to design and develop reusable web components to display this data on the PDBe website
- to integrate the data in the PDBe search system
- to extend the existing PDBe REST API by developing new calls to export this data (Current API: http://www.ebi.ac.uk/pdbe/api/doc/)
- to interact with other EMBL-EBI teams which are participating in this data sharing project, primarily Thornton research group
Requeriments :
Skills :
Areas :
Additional Info:
Contract Duration: 2 years and 4 months Grading: 5 (monthly salary starting at £2,507 after tax). The Protein Data Bank in Europe Team (PDBe; pdbe.org) is part of the worldwide Protein Data Bank organisation (wwPDB; wwpdb.org), which maintains the global archive of structural data on biomacromolecules - the PDB. The PDBe Team also maintains a number of databases that support deposition and advanced search services for structural biologists and the wider scientific community. The Team consists of an international and inter-disciplinary mix of professionals: scientists, software engineers, and database engineers. The PDBe and CS3DB teams form the Molecular and Cellular Structure cluster within the EBI. [Click Here to Access the Original Job Post]