Job date: 2015-08-14
End Date:
Company : Ledgent Technology & Engineering Country : Role : Faculty
*Direct Hire position in La Jolla**120-125K**Must have authorization to work for any company in the US without requiring sponsorship.*
Bioinformatics EngineerThe Bioinformatics Engineer is primarily responsible for optimizing and maintaining the Annotation Pipeline in an HPC environment. The candidate will have experience working with batch job scheduling systems such as SGE, TORQUE, and PBS, build automated and version-controlled pipelines, and be familiar with genetics and general systems biology concepts. The candidate will also assist in creating automated deployment workflows and implement the application in other parallel, large-scale distributed frameworks such as Hadoop. The Bioinformatics Engineer must also be comfortable with writing systems tests including unit tests, functional tests, and integration tests.Responsibilities
Extend functionality and optimize processing time of the Cypher Annotation Pipeline (CAP)Create automated workflows to update and version CAP data sources and toolsEstablish protocol for running and managing multiple, parallel versions of CAPCreate automated systems tests and integrate other bioinformatics tools and databases to CAPDeliver high quality software in an agile environment.Willing to be part of and work in a fast paced startup culture.Required Skills
0 to 5+ years experience delivering sophisticated multi-tier solutions.Superb software architecture skills and object oriented programming.Knowledgeable in Bioinformatics and general systems biology concepts.Expert in Python and familiar with Java.Familiar with SGE/TORQUE/PBS batch job scheduling systems.Experience interacting with relational and/or NoSQL databases.Experience working with Hadoop MapReduce and HDFS.Self-starter, excellent critical thinking, problem solving and analytical skills.B.S. in Computer Science/Engineering/Physics/Mathematics/Bioinformatics, or related field.Passion for perfection!Required experience:
Python, nosql, hadoop, hdfs, sge, torque, pbs: 5 yearsSkills :
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