Job ID: 153919
Job date: 2018-03-02
End Date:
Company : University of Washington Country : Role : Other
Job date: 2018-03-02
End Date:
Company : University of Washington Country : Role : Other
Job Description:
The Department of Genome Sciences currently has an outstanding opportunity for a BIOINFORMATICS SPECIALIST . The Bioinformatics Specialist (Research Consultant) will lead genome-wide analyses to investigate copy number and genomic structural variation specifically within complex regions of the human genome including regions of segmental duplications. S/he will work with the PI and postdoctoral fellows to develop computational pipelines using a suite of next-generation sequencing technologies, including Illumina, long-read single-molecule, real-time (SMRT) PacBio, and traditional capillary sequencing technology. S/he will participate in national and international consortium focused on understanding the genetic architecture of autism, assembly of primate genomes, and the characterization of human genome structural variation. Position Complexities: This lab is involved in several different projects simultaneously, which requires skills in integrating data and systems. Familiarity with existing bioinformatics-specific software tools, especially data-mining of whole-genome shotgun sequence data analysis, is required. Experience in genomics research is necessary for performance of this job. The ideal candidate will independently perform scientific investigative procedures requiring application of professional judgment, interpret experimental results, guide lab members through bioinformatics methods and analyses, and prepare reports of research for presentation or publication. This position will work in a prominent laboratory whose work impacts other researchers worldwide. Duties and Responsibilities:
Additional Info:
Req #: 153919 Department: GENOME SCIENCES Job Location: Seattle Campus Posting Date: 03/02/2018 Closing Info: Open Until Filled Salary: Salary is commensurate with education and experience Shift: First Shift Notes: As a UW employee, you will enjoy generous benefits and work/life programs. For a complete description of our benefits for this position, please visit our website, click here. As a UW employee, you have a unique opportunity to change lives on our campuses, in our state and around the world. UW employees offer their boundless energy, creative problem solving skills and dedication to build stronger minds and a healthier world. The Department of Genome Sciences (GS) is part of the University of Washington School of Medicine (UW SoM) and is comprised of 26 labs addressing leading edge questions in biology and medicine by developing and applying genetic, genomic and computational approaches taking advantage of genomic information now available for a host of species. GS is making major contributions in the application of genome science to understand the fundamentals of biology and to improve human health and wellbeing. Genome Sciences is a collaborative department supported by very different academic disciplines. We work with a multitude of Program Investigators (PIs) in departments both on the UW campus as well as worldwide. The department has gone through significant expansion since its beginning in 2001 with annual grant awards of $67M in FY17. Application Process: The application process for UW positions may include completion of a variety of online assessments to obtain additional information that will be used in the evaluation process. These assessments may include Work Authorization, Criminal Conviction History, Cover Letter and/or others. Any assessments that you need to complete will appear on your screen as soon as you select “Apply to this position”. Once you begin an assessment, it must be completed at that time; if you do not complete the assessment you will be prompted to do so the next time you access your “My Jobs” page. If you select to take it later, it will appear on your "My Jobs" page to take when you are ready. Please note that your application will not be reviewed, and you will not be considered for this position until all required assessments have been completed. The University of Washington is a leader in environmental stewardship & sustainability , and committed to becoming climate neutral. The University of Washington is an equal opportunity, affirmative action employer. To request disability accommodation in the application process, contact the Disability Services Office at 206-543-6450 / 206-543-6452 (tty) or dso@uw.edu . [Click Here to Access the Original Job Post]
The Department of Genome Sciences currently has an outstanding opportunity for a BIOINFORMATICS SPECIALIST . The Bioinformatics Specialist (Research Consultant) will lead genome-wide analyses to investigate copy number and genomic structural variation specifically within complex regions of the human genome including regions of segmental duplications. S/he will work with the PI and postdoctoral fellows to develop computational pipelines using a suite of next-generation sequencing technologies, including Illumina, long-read single-molecule, real-time (SMRT) PacBio, and traditional capillary sequencing technology. S/he will participate in national and international consortium focused on understanding the genetic architecture of autism, assembly of primate genomes, and the characterization of human genome structural variation. Position Complexities: This lab is involved in several different projects simultaneously, which requires skills in integrating data and systems. Familiarity with existing bioinformatics-specific software tools, especially data-mining of whole-genome shotgun sequence data analysis, is required. Experience in genomics research is necessary for performance of this job. The ideal candidate will independently perform scientific investigative procedures requiring application of professional judgment, interpret experimental results, guide lab members through bioinformatics methods and analyses, and prepare reports of research for presentation or publication. This position will work in a prominent laboratory whose work impacts other researchers worldwide. Duties and Responsibilities:
- Develop and streamline algorithms and computational tools to detect duplications, copy number variants, and single-nucleotide polymorphisms using data generated from genome sequencing projects. (30%)
- Manage genome datasets, local UCSC Genome Browser and interact with IT to optimize massively parallel computing infrastructure (2000+ CPUs) and transfer of data from and to cloud services. (20%)
- Create new programs and/or scripts, including graphical visualization software to facilitate large-scale datamining of the genome, genetic and expression databases. (20%)
- Prepare reports and presentations for research projects, including collaborations as part of international consortia. (10%)
- Train programmers and work independently as well as with trainees on research projects as assigned by the Investigator (10%)
- Provide support for PacBio Cost Center. (10%)
- A Bachelor's Degree in Computer Sciences, Bioinformatics, or related field.
- At least three years of experience developing computational methods and tools used in bioinformatics research.
- In-depth understanding of data structure and algorithm design and implementation.
- Extensive experience in two or more programming languages (C/C++, Perl, Python, Java, etc.).
- Skilled with Linux/Unix and working in a command line environment.
- Ability to perform independent analyses and report findings to both national and international collaborative groups.
- Technical proficiency and collaborative ability as well as independent thought.
- Ability to develop innovative processes to achieve goals. Reviews work activities to determine where new information could improve processes or move projects forward.
- Ability to work independently and as part of a multidisciplinary team.
- Masters of Science degree in computer science/bioinformatics or related field or equivalent in education and experience.
- At least one year of bioinformatics or related research experience in data analysis of next-generation sequencing or whole-genome shotgun data.
- Proficient with existing bioinformatics tools (e.g., BWA, GATK, BLAST, CLUSTALW, or MEGA).
Requeriments :
Skills :
- genomic
- Lunix/Unix
- Next Generation Sequencing
- Programing in C
- Programing in C++
- Programing in Python
- Programing Skills
- Programming in Java
- Programming in PERL
Areas :
Additional Info:
Req #: 153919 Department: GENOME SCIENCES Job Location: Seattle Campus Posting Date: 03/02/2018 Closing Info: Open Until Filled Salary: Salary is commensurate with education and experience Shift: First Shift Notes: As a UW employee, you will enjoy generous benefits and work/life programs. For a complete description of our benefits for this position, please visit our website, click here. As a UW employee, you have a unique opportunity to change lives on our campuses, in our state and around the world. UW employees offer their boundless energy, creative problem solving skills and dedication to build stronger minds and a healthier world. The Department of Genome Sciences (GS) is part of the University of Washington School of Medicine (UW SoM) and is comprised of 26 labs addressing leading edge questions in biology and medicine by developing and applying genetic, genomic and computational approaches taking advantage of genomic information now available for a host of species. GS is making major contributions in the application of genome science to understand the fundamentals of biology and to improve human health and wellbeing. Genome Sciences is a collaborative department supported by very different academic disciplines. We work with a multitude of Program Investigators (PIs) in departments both on the UW campus as well as worldwide. The department has gone through significant expansion since its beginning in 2001 with annual grant awards of $67M in FY17. Application Process: The application process for UW positions may include completion of a variety of online assessments to obtain additional information that will be used in the evaluation process. These assessments may include Work Authorization, Criminal Conviction History, Cover Letter and/or others. Any assessments that you need to complete will appear on your screen as soon as you select “Apply to this position”. Once you begin an assessment, it must be completed at that time; if you do not complete the assessment you will be prompted to do so the next time you access your “My Jobs” page. If you select to take it later, it will appear on your "My Jobs" page to take when you are ready. Please note that your application will not be reviewed, and you will not be considered for this position until all required assessments have been completed. The University of Washington is a leader in environmental stewardship & sustainability , and committed to becoming climate neutral. The University of Washington is an equal opportunity, affirmative action employer. To request disability accommodation in the application process, contact the Disability Services Office at 206-543-6450 / 206-543-6452 (tty) or dso@uw.edu . [Click Here to Access the Original Job Post]