Job ID: 319762
Job date: 2017-09-02
End Date:
Company : University of Minnesota Country : Role : Research Scientist
Job date: 2017-09-02
End Date:
Company : University of Minnesota Country : Role : Research Scientist
Job Description:
This position involves the development and evaluation of bioinformatics software, as well as application to analysis of basic and clinical research data. With supervisor direction, the researcher work with a collaborative research team of software developers, data scientists and biological researchers to help develop and test software used in workflows that integrate different types of genomic and proteomic data. The researcher will help to document software operations, working with others in the research team to apply the software to basic research studies and generate training material to promote use by others. The researcher will also help develop and implement a mathematical model sexually transmitted infections, working with a Dr. Eva Enns and research team members. Job Duties: 60% - Software Development and Testing: Software tools for analysis of genomic and proteomic data will be wrapped in the Galaxy platform and tested for functionality. Optimization and bug fixes will be carried out as needed, working with other members of the research team to evaluate performance and additional features required 20% - Documentation and Application to Research Data: Documentation will be developed in collaboration with other research team members to enable training of users in the use of implemented software tools. In some cases, work will be done with collaborating biological researchers seeking to utilize software tools on their data. 20% - Mathematical Modeling of Sexual Transmitted Infections: Literature and existing datasets pertaining to sexual behavior will be reviewed. A mathematical model of a sexually transmitted infection will be adapted to specific example cases. The model will be simulated under different scenarios and assumptions and results will be compiled / summarized. Required Qualifications:
Additional Info:
About the Department The department of Biochemistry, Molecular Biology and Biophysics is committed to understanding the molecular mechanisms of metabolic diseases and cancer; developing novel strategies in biocatalysis and biotechnology; and advancing knowledge through structural biology and molecular biophysics. We organize ourselves into research divisions with emphases on Chemical and Structural Biology, Metabolic and Systems Biology, Molecular Biology and Synthetic Biology and Biotechnology. We are housed in new buildings with state-of-the-art research and support facilities. How To Apply Applications must be submitted online. To be considered for this position, please click the Apply button and follow the instructions. You will be given the opportunity to complete an online application for the position and attach a cover letter and resume. Additional documents may be attached after application by accessing your "My Activities" page and uploading documents there. To request an accommodation during the application process, please e-mail employ@umn.edu or call (612) 624-UOHR (8647). Diversity: The University recognizes and values the importance of diversity and inclusion in enriching the employment experience of its employees and in supporting the academic mission. The University is committed to attracting and retaining employees with varying identities and backgrounds. The University of Minnesota provides equal access to and opportunity in its programs, facilities, and employment without regard to race, color, creed, religion, national origin, gender, age, marital status, disability, public assistance status, veteran status, sexual orientation, gender identity, or gender expression. To learn more about diversity at the U: http://diversity.umn.edu. Background Check Information: Any offer of employment is contingent upon the successful completion of a background check. Our presumption is that prospective employees are eligible to work here. Criminal convictions do not automatically disqualify finalists from employment. About the U of M The University of Minnesota, Twin Cities (UMTC) The University of Minnesota, Twin Cities (UMTC), is among the largest public research universities in the country, offering undergraduate, graduate, and professional students a multitude of opportunities for study and research. Located at the heart of one of the nation's most vibrant, diverse metropolitan communities, students on the campuses in Minneapolis and St. Paul benefit from extensive partnerships with world-renowned health centers, international corporations, government agencies, and arts, nonprofit, and public service organizations.[Click Here to Access the Original Job Post]
This position involves the development and evaluation of bioinformatics software, as well as application to analysis of basic and clinical research data. With supervisor direction, the researcher work with a collaborative research team of software developers, data scientists and biological researchers to help develop and test software used in workflows that integrate different types of genomic and proteomic data. The researcher will help to document software operations, working with others in the research team to apply the software to basic research studies and generate training material to promote use by others. The researcher will also help develop and implement a mathematical model sexually transmitted infections, working with a Dr. Eva Enns and research team members. Job Duties: 60% - Software Development and Testing: Software tools for analysis of genomic and proteomic data will be wrapped in the Galaxy platform and tested for functionality. Optimization and bug fixes will be carried out as needed, working with other members of the research team to evaluate performance and additional features required 20% - Documentation and Application to Research Data: Documentation will be developed in collaboration with other research team members to enable training of users in the use of implemented software tools. In some cases, work will be done with collaborating biological researchers seeking to utilize software tools on their data. 20% - Mathematical Modeling of Sexual Transmitted Infections: Literature and existing datasets pertaining to sexual behavior will be reviewed. A mathematical model of a sexually transmitted infection will be adapted to specific example cases. The model will be simulated under different scenarios and assumptions and results will be compiled / summarized. Required Qualifications:
- A Bachelor’s degree in bioinformatics, computational biology or related field and one year of experience or equivalent combination of related education and work experience to equal five (5) years.
- Demonstrated expertise in programming (Python, R, JavaScript etc.) is required.
- Experience and deep knowledge of bioinformatics is necessary, specifically in the area of software development related to mass spectrometry-based proteomics data analysis and integration with other ‘omics data types.
- Proven ability to work with a team of other researchers (biologists, software developers, clinicians etc) is also essential.
- At least 1 year of experience working on bioinformatics-related projects is preferred.
- Familiarity with the Galaxy bioinformatics platform, is also preferred.
Requeriments :
Skills :
Areas :
Additional Info:
About the Department The department of Biochemistry, Molecular Biology and Biophysics is committed to understanding the molecular mechanisms of metabolic diseases and cancer; developing novel strategies in biocatalysis and biotechnology; and advancing knowledge through structural biology and molecular biophysics. We organize ourselves into research divisions with emphases on Chemical and Structural Biology, Metabolic and Systems Biology, Molecular Biology and Synthetic Biology and Biotechnology. We are housed in new buildings with state-of-the-art research and support facilities. How To Apply Applications must be submitted online. To be considered for this position, please click the Apply button and follow the instructions. You will be given the opportunity to complete an online application for the position and attach a cover letter and resume. Additional documents may be attached after application by accessing your "My Activities" page and uploading documents there. To request an accommodation during the application process, please e-mail employ@umn.edu or call (612) 624-UOHR (8647). Diversity: The University recognizes and values the importance of diversity and inclusion in enriching the employment experience of its employees and in supporting the academic mission. The University is committed to attracting and retaining employees with varying identities and backgrounds. The University of Minnesota provides equal access to and opportunity in its programs, facilities, and employment without regard to race, color, creed, religion, national origin, gender, age, marital status, disability, public assistance status, veteran status, sexual orientation, gender identity, or gender expression. To learn more about diversity at the U: http://diversity.umn.edu. Background Check Information: Any offer of employment is contingent upon the successful completion of a background check. Our presumption is that prospective employees are eligible to work here. Criminal convictions do not automatically disqualify finalists from employment. About the U of M The University of Minnesota, Twin Cities (UMTC) The University of Minnesota, Twin Cities (UMTC), is among the largest public research universities in the country, offering undergraduate, graduate, and professional students a multitude of opportunities for study and research. Located at the heart of one of the nation's most vibrant, diverse metropolitan communities, students on the campuses in Minneapolis and St. Paul benefit from extensive partnerships with world-renowned health centers, international corporations, government agencies, and arts, nonprofit, and public service organizations.[Click Here to Access the Original Job Post]