Senior Bioinformatics Software Engineer – (170001WG)

Job ID: 170001WG
Job date: 2017-11-29
End Date:

Company : University of Maryland Baltimore County 

Country :

Role : Technician 


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Job Description:
The University of Maryland, Baltimore (UMB), School of Medicine - Institute for Genome Sciences (IGS) is currently recruiting for a Senior Bioinformatics Software Engineer (Sr. BSE). The Sr. BSE will independently develops and maintains software that drives, interacts with, or extracts data from complex engineered systems, such as genomic sequencing systems. Contribute to projects intended to develop software or design database to accomplish specific scientific or analytical objective. Develop tools, protocols or structured methods for organizing or presenting data from analytical or diagnostic systems.

Essential Functions:

  • Independently develops and maintains software that drives, interacts with, or extracts data from complex engineered systems, such as genomic sequencing systems. Contribute to projects intended to develop software or design database to accomplish specific scientific or analytical objective. Develop tools, protocols or structured methods for organizing or presenting data from analytical or diagnostic systems.
  • Essential Functions
  • Independently develop and maintain software based on the requirements specified by lead engineers, senior engineers and scientists.
  • Design, develop and maintain analysis pipelines using the tools and systems available at IGS. This will include installing software and writing wrapper scripts to invoke the software to process data.
  • Identify, evaluate and incorporate bioinformatics applications and computer algorithms by studying pertinent literature.
  • Provide technical leadership for small projects including requirements capture, software design, design documentation, design presentation and review, time estimation, implementation and coordination. Provide end user training for such projects.
  • Mentor less experienced engineers in tools, database architecture, software architecture, analysis methods and pipelines.
  • Manage genomics related data generated and maintained at IGS including loading and querying data from database systems, writing scripts to transform the data to necessary formats, and downloading and transforming genomic data maintained in public data repositories.
  • Ensures basic quality assurance of data and software generated by IGS by designing and implementing test methodologies.
Qualifications:

Education: Bachelor's in Information Technology, Computer Science, Systems Administration, Computer Engineering or a related field.

Experience: Six (6) years experience in bioinformatics tool use, software development, or analysis of biological data.

Master's degree in Bioinformatics, Computer Science or related field may be substituted for two (2) years experience.

Two (2) years multiple small-scale project Management.


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Additional Info:
Benefits Information:

UMB offers a generous benefits package that includes 22 vacation days, 14 floating and holidays, 15 sick days; comprehensive health insurance and retirement options; and tuition remission for employees and their dependents at any of the University System of Maryland schools.

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