Job ID: 13747
Job date: 2018-06-11
End Date: 2018-08-10
Company : Children s Hospital of Philadelphia Country : United States Role : Technician
Job date: 2018-06-11
End Date: 2018-08-10
Company : Children s Hospital of Philadelphia Country : United States Role : Technician
Job Description:
The Bioinformatics Engineer I in the bioinformatics group at the Division of Genomic Diagnostics (DGD) is an entry-level position in the support of computational environment, workflows, in-house and commercial tools and algorithms focused on the management and general processing of the complex genomic data types associated with diagnostics tests. The successful candidate will support and contribute to various applications and pipelines within the DGD. We are looking for highly creative people who share our mission to advance child health and who will thrive in a continuous learning environment, acquiring and applying both new technical skills and biomedical domain knowledge. Job Responsibilities : Specifically the Bioinformatics Engineer I will: 1. Work with bioinformatics group members to develop and support clinical-grade validated bioinformatics pipelines upstream of lab and clinical interpretation 2. Maintain pipelines by staying current with evolving algorithms and standards, evaluating and incorporating into pipelines 3. Execute robust development testing for commonly used applications such as data processing pipelines and other genomic oriented web applications 4. Define and prioritize requirements for pipeline development over time to incorporate new technologies and platforms via functional communication with bioinformatics group members and bioinformatics end users 5. Implement, update and maintain locally stored data resources required for various analysis tasks. 6. Provide efficient data management support including file transfers, data formatting and manipulation, and basic integration of data from a variety of experimental and reference resources 7. Implement, maintain, and regularly contribute to formal and bioinformatics group-centralized code management system. 8. Adopt appropriate forking and other strategies for robust code development. Apply to general bioinformatics group code base. Required Education and Experience : 1. BS or MS in computer science, bioinformatics, or a related computational discipline. 2. 0-3 years in applied bioinformatics, computational, and genomics areas
Additional Info:
Req ID: 13747 Shift: Days Employment Status: AF - Active - Regular - Full Time All CHOP employees who work in a patient building or who provide patient care are required to receive an annual influenza vaccine unless they are granted a medical or religious exemption. Children's Hospital of Philadelphia is committed to providing a safe and healthy environment for its patients, family members, visitors and employees. In an effort to achieve this goal, employment at Children's Hospital of Philadelphia, other than for positions with regularly scheduled hours in New Jersey, is contingent upon an attestation that the job applicant does not use tobacco products or nicotine in any form and a negative nicotine screen (the latter occurs after a job offer). Children's Hospital of Philadelphia is an equal opportunity employer. We do not discriminate on the basis of race, color, gender, gender identity, sexual orientation, age, religion, national or ethnic origin, disability or protected veteran status. VEVRAA Federal Contractor/Seeking priority referrals for protected veterans. Please contact our hiring official with any referrals or questions. CHOP Careers Contact Talent Acquisition 2716 South Street, 6th Floor Philadelphia, PA 19146 Phone: 866-820-9288 Email: TalentAcquisition@email.chop.edu[Click Here to Access the Original Job Post]
The Bioinformatics Engineer I in the bioinformatics group at the Division of Genomic Diagnostics (DGD) is an entry-level position in the support of computational environment, workflows, in-house and commercial tools and algorithms focused on the management and general processing of the complex genomic data types associated with diagnostics tests. The successful candidate will support and contribute to various applications and pipelines within the DGD. We are looking for highly creative people who share our mission to advance child health and who will thrive in a continuous learning environment, acquiring and applying both new technical skills and biomedical domain knowledge. Job Responsibilities : Specifically the Bioinformatics Engineer I will: 1. Work with bioinformatics group members to develop and support clinical-grade validated bioinformatics pipelines upstream of lab and clinical interpretation 2. Maintain pipelines by staying current with evolving algorithms and standards, evaluating and incorporating into pipelines 3. Execute robust development testing for commonly used applications such as data processing pipelines and other genomic oriented web applications 4. Define and prioritize requirements for pipeline development over time to incorporate new technologies and platforms via functional communication with bioinformatics group members and bioinformatics end users 5. Implement, update and maintain locally stored data resources required for various analysis tasks. 6. Provide efficient data management support including file transfers, data formatting and manipulation, and basic integration of data from a variety of experimental and reference resources 7. Implement, maintain, and regularly contribute to formal and bioinformatics group-centralized code management system. 8. Adopt appropriate forking and other strategies for robust code development. Apply to general bioinformatics group code base. Required Education and Experience : 1. BS or MS in computer science, bioinformatics, or a related computational discipline. 2. 0-3 years in applied bioinformatics, computational, and genomics areas
Additional Technical Requirements
Requirements: 1. Strong LINUX expertise required. 2. Familiarity with high-performance computing environment 3. Experience with Python, Java, or other languages required 4. Web-development in modern web frameworks and application maintenance experience preferred 5. Experience with pipeline or workflow development frameworks preferred. 6. Experience with relational and non-relational databases and SQL queries preferred 7. Familiarity with open source and commercial bioinformatics resources and software preferred. 8. Experience with genomic data analysis preferred. 9. Familiarity with source/version control tools (Git, etc.) 10. Knowledge of the working NGS, or other high-throughput technologies and related bioinformatics tools (aligners, variant callers, quality metrics etc.) 11. Familiarity with resources of genomic data sets and analysis tools, such as UCSC Genome Browser, Bioconductor, ENCODE, and NCBI databases is preferred. 12. Accountability and attention to timelines. 13. Excellent organization and communication skills with an emphasis on strong presentation skills 14. Ability to work in a team environment.Requeriments :
Skills :
- Bioinformatics
- genomic
- HPC
- Lunix/Unix
- Next Generation Sequencing
- Programing in Python
- Programming in Java
- SQL
- Version Control
Areas :
Additional Info:
Req ID: 13747 Shift: Days Employment Status: AF - Active - Regular - Full Time All CHOP employees who work in a patient building or who provide patient care are required to receive an annual influenza vaccine unless they are granted a medical or religious exemption. Children's Hospital of Philadelphia is committed to providing a safe and healthy environment for its patients, family members, visitors and employees. In an effort to achieve this goal, employment at Children's Hospital of Philadelphia, other than for positions with regularly scheduled hours in New Jersey, is contingent upon an attestation that the job applicant does not use tobacco products or nicotine in any form and a negative nicotine screen (the latter occurs after a job offer). Children's Hospital of Philadelphia is an equal opportunity employer. We do not discriminate on the basis of race, color, gender, gender identity, sexual orientation, age, religion, national or ethnic origin, disability or protected veteran status. VEVRAA Federal Contractor/Seeking priority referrals for protected veterans. Please contact our hiring official with any referrals or questions. CHOP Careers Contact Talent Acquisition 2716 South Street, 6th Floor Philadelphia, PA 19146 Phone: 866-820-9288 Email: TalentAcquisition@email.chop.edu[Click Here to Access the Original Job Post]