Job ID: 492674
Job date: 2017-01-23
End Date:
Company : Kansas State University Country : Role : Research Scientist
Job date: 2017-01-23
End Date:
Company : Kansas State University Country : Role : Research Scientist
Job Description:
The Research Analyst in Bioinformatics (Bioinformatics Programmer) will lead the implementation of novel bioinformatics approaches for analysis of whole-genome and reduced representation sequencing for genomics and breeding applications on multiple large-scale projects in wheat genomics. The bioinformaticist will focus on genomics of wheat and related species with large, complex genomes with objectives of improving genome assembly anchoring and ordering, improving approaches for sequence read mapping and variant calling and improving computational speed and processing of large datasets. Responsibilities include: -Integration of improved approaches and methods for data management and access of data into robust, user-friendly pipelines for rapid analysis. -Feedback for improvement of wet-lab protocols and procedures based on sequencing results. -Management and interpretation of large genomics datasets, develop improved imputation approaches, generate whole-genome prediction models, and identify phenotype-trait associations in complex genomes. -Lead preparation of peer-reviewed scientific manuscripts reporting research methodology, results and interpretations and present to scientific community and stakeholders at workshops and meetings. -Contribute to training of graduate and undergraduate students, visiting scholars, and research associates in applications of bioinformatics and genomics focused on breeding and genetics research. -Contribute to an environment that fosters diversity and collegiality. Required Minimum Qualifications: -Ph.D. in bioinformatics, computational biology, or closely related discipline. -Experience with analysis of whole-genome and reduced representation sequencing. -Strong proficiency in programming with some combination of Java, Python, Perl/BioPerl, C/C++ and the R statistical package. -Experience building and deploying applications on Linux cluster environment. -Familiarity with database development, design and optimization. -Demonstrated knowledge of complete next-generation sequencing pipeline. -Experience developing and implementing statistical modeling for whole-genome prediction and trait association analysis. -Demonstrated experience creating high-quality, peer-reviewed manuscripts. -Experience with code version control (Git) and program/code development in collaborative environment. -Excellent interpersonal, verbal and written skills. -Strong commitment to expanding and fostering diversity. Preferred Qualifications: -Experience with genomics applications in wheat. -Six or more years of relevant experience. -Knowledge, background, or experience in molecular biology and genetics. -Ability to prioritize and balance multiple projects to meet timelines.
Additional Info:
For additional information regarding the Department of Plant Pathology, please visit www.plantpath.k-state.edu Kansas State University embraces diversity, and promotes inclusion in every sector of the institution. The university established the Office of Diversity, led by the associate vice president for diversity and a dedicated staff. Additionally, each college has a designated Diversity Point Person to provide insight and guidance. Kansas State University received the prestigious Higher Education Excellence in Diversity, or HEED, award from Insight Into Diversity magazine for the past three years. Multicultural students account for 15 percent of our student population, a university record and continuing trend. Special Instructions to Applicants: Please upload complete application including (1) letter of application summarizing research experience and interests (2) curriculum vitae including research experience, and (3) names and contact information (include: address, telephone, email) of three references familiar with your professional skills and experience. Screening of Applications Begins: Screening of applications begins immediately and continues until the position is filled. Equal Employment Opportunity: Kansas State University is an Equal Opportunity Employer of individuals with disabilities and protected veterans and actively seeks diversity among its employees. Equal Employment Opportunity is the Law. Background Screening Statement: In connection with your application for employment, Kansas State University may procure a Background Screen on you as part of the process of considering your candidacy as an employee. [Click Here to Access the Original Job Post]
The Research Analyst in Bioinformatics (Bioinformatics Programmer) will lead the implementation of novel bioinformatics approaches for analysis of whole-genome and reduced representation sequencing for genomics and breeding applications on multiple large-scale projects in wheat genomics. The bioinformaticist will focus on genomics of wheat and related species with large, complex genomes with objectives of improving genome assembly anchoring and ordering, improving approaches for sequence read mapping and variant calling and improving computational speed and processing of large datasets. Responsibilities include: -Integration of improved approaches and methods for data management and access of data into robust, user-friendly pipelines for rapid analysis. -Feedback for improvement of wet-lab protocols and procedures based on sequencing results. -Management and interpretation of large genomics datasets, develop improved imputation approaches, generate whole-genome prediction models, and identify phenotype-trait associations in complex genomes. -Lead preparation of peer-reviewed scientific manuscripts reporting research methodology, results and interpretations and present to scientific community and stakeholders at workshops and meetings. -Contribute to training of graduate and undergraduate students, visiting scholars, and research associates in applications of bioinformatics and genomics focused on breeding and genetics research. -Contribute to an environment that fosters diversity and collegiality. Required Minimum Qualifications: -Ph.D. in bioinformatics, computational biology, or closely related discipline. -Experience with analysis of whole-genome and reduced representation sequencing. -Strong proficiency in programming with some combination of Java, Python, Perl/BioPerl, C/C++ and the R statistical package. -Experience building and deploying applications on Linux cluster environment. -Familiarity with database development, design and optimization. -Demonstrated knowledge of complete next-generation sequencing pipeline. -Experience developing and implementing statistical modeling for whole-genome prediction and trait association analysis. -Demonstrated experience creating high-quality, peer-reviewed manuscripts. -Experience with code version control (Git) and program/code development in collaborative environment. -Excellent interpersonal, verbal and written skills. -Strong commitment to expanding and fostering diversity. Preferred Qualifications: -Experience with genomics applications in wheat. -Six or more years of relevant experience. -Knowledge, background, or experience in molecular biology and genetics. -Ability to prioritize and balance multiple projects to meet timelines.
Requeriments :
Skills :
- Database design
- Genetics
- genomic
- Lunix/Unix
- Modeling
- molecular biology
- Next Generation Sequencing
- Programing in C
- Programing in C++
- Programing in Python
- Programming in Java
- Programming in PERL
- Programming in R
- Statistics
Areas :
Additional Info:
For additional information regarding the Department of Plant Pathology, please visit www.plantpath.k-state.edu Kansas State University embraces diversity, and promotes inclusion in every sector of the institution. The university established the Office of Diversity, led by the associate vice president for diversity and a dedicated staff. Additionally, each college has a designated Diversity Point Person to provide insight and guidance. Kansas State University received the prestigious Higher Education Excellence in Diversity, or HEED, award from Insight Into Diversity magazine for the past three years. Multicultural students account for 15 percent of our student population, a university record and continuing trend. Special Instructions to Applicants: Please upload complete application including (1) letter of application summarizing research experience and interests (2) curriculum vitae including research experience, and (3) names and contact information (include: address, telephone, email) of three references familiar with your professional skills and experience. Screening of Applications Begins: Screening of applications begins immediately and continues until the position is filled. Equal Employment Opportunity: Kansas State University is an Equal Opportunity Employer of individuals with disabilities and protected veterans and actively seeks diversity among its employees. Equal Employment Opportunity is the Law. Background Screening Statement: In connection with your application for employment, Kansas State University may procure a Background Screen on you as part of the process of considering your candidacy as an employee. [Click Here to Access the Original Job Post]