Job ID: 322008
Job date: 2018-01-27
End Date:
Company : University of Minnesota Country : Role : Postdoc
Job date: 2018-01-27
End Date:
Company : University of Minnesota Country : Role : Postdoc
Job Description:
About the Job: The Department of Veterinary Population Medicine is a leader in infectious diseases of animals. We are looking to expand our whole genome sequencing for research and diagnostic purposes. These methods require bioinformatics analysis of next-generation sequencing data and a deep understanding of the underlying biology of viral and/or bacterial agents. The PI has different collaborative research projects in which NGS data analysis is one of the main components. This position will help the PI in bioinformatics analysis of NGS data from collaborative research projects as well as from routine diagnostic cases. Common tasks:
Additional Info:
Location: Twin Cities Empl Group: Acad Prof and Admin Full/Part Time: Full-Time How To Apply: Applications must be submitted online. To be considered for this position, please include: (1) a cover letter describing research interests and their fit with this position, (2) a possible start date, and (3) a curriculum vitae. Additional documents may be attached after application by accessing your "My Activities" page and uploading documents there. To request an accommodation during the application process, please e-mail employ@umn.edu or call (612) 624-UOHR (8647). Diversity The University recognizes and values the importance of diversity and inclusion in enriching the employment experience of its employees and in supporting the academic mission. The University is committed to attracting and retaining employees with varying identities and backgrounds. The University of Minnesota provides equal access to and opportunity in its programs, facilities, and employment without regard to race, color, creed, religion, national origin, gender, age, marital status, disability, public assistance status, veteran status, sexual orientation, gender identity, or gender expression. To learn more about diversity at the U: http://diversity.umn.edu. Background Check Information Any offer of employment is contingent upon the successful completion of a background check. Our presumption is that prospective employees are eligible to work here. Criminal convictions do not automatically disqualify finalists from employment. About the U of M: The University of Minnesota, Twin Cities (UMTC) The University of Minnesota, Twin Cities (UMTC), is among the largest public research universities in the country, offering undergraduate, graduate, and professional students a multitude of opportunities for study and research. Located at the heart of one of the nation's most vibrant, diverse metropolitan communities, students on the campuses in Minneapolis and St. Paul benefit from extensive partnerships with world-renowned health centers, international corporations, government agencies, and arts, nonprofit, and public service organizations.[Click Here to Access the Original Job Post]
About the Job: The Department of Veterinary Population Medicine is a leader in infectious diseases of animals. We are looking to expand our whole genome sequencing for research and diagnostic purposes. These methods require bioinformatics analysis of next-generation sequencing data and a deep understanding of the underlying biology of viral and/or bacterial agents. The PI has different collaborative research projects in which NGS data analysis is one of the main components. This position will help the PI in bioinformatics analysis of NGS data from collaborative research projects as well as from routine diagnostic cases. Common tasks:
- Metagenomics sequence analysis
- De novo and reference based genome assembly
- Review results for quality and accuracy
- Generate phylogenetic analysis
- Bioinformatics pipeline development
- Test and compare new software packages
- Implement improvements in existing pipelines
- Data management in UNIX/Linux environment
- Mentor undergraduate/graduate students
- Participate in design of collaborative research projects focused on virome and microbiome studies
- Attend, participate, or present at laboratory meetings, seminars, and conferences as needed
- To collaborate with the PI in the generation and testing of research hypotheses and data analysis, writing of papers, grants, and reports including preparation of presentations and lectures, and publishing manuscripts in scientific journals
- To perform miscellaneous laboratory duties as assigned by the PI including, but not limited to, help the PI in the organization and coordination of meetings and research projects.
Qualifications
Required Qualifications: Position requires PhD in bioinformatics or a related field. Experience in handling and analyzing data sets from high-throughput platforms such as Next-Generation-Sequencing. General proficiency with programming languages (e.g. Python, R, bash, etc.). Skills needed are motivation, ability to manage time and meet deadlines, strong communication skills, strong organizational skills, reliability and accountability. Preferred Qualifications: Experience with bioinformatics (e.g. BWA, samtools, PICARD, assembly programs, IGV) and sequence analysis tools (e.g. NCBI GenBank, BLASTn, MUSLCE, phylogenetic trees, gene annotation). Research background in genomics, genetics, molecular biology, or computational biology. Strong general computational and programming skills and competency in UNIX shell environment. Bioinformatics knowledge regarding analysis of next-generation sequencing data (Illumina and/or Nanopore/PacBio). Research background in both molecular biology and computational biology is desired. Experience in developing data analysis pipelines (scripts) for automated analyses, including working in a distributed computing environment (supercomputer).Requeriments :
Skills :
- Bioinformatics
- Biology
- Computational Biology
- Genetics
- Genome Assembly
- genomic
- Lunix/Unix
- Metagenomics
- molecular biology
- Next Generation Sequencing
- Programing in Python
- Programing Skills
- Programming in R
Areas :
Additional Info:
Location: Twin Cities Empl Group: Acad Prof and Admin Full/Part Time: Full-Time How To Apply: Applications must be submitted online. To be considered for this position, please include: (1) a cover letter describing research interests and their fit with this position, (2) a possible start date, and (3) a curriculum vitae. Additional documents may be attached after application by accessing your "My Activities" page and uploading documents there. To request an accommodation during the application process, please e-mail employ@umn.edu or call (612) 624-UOHR (8647). Diversity The University recognizes and values the importance of diversity and inclusion in enriching the employment experience of its employees and in supporting the academic mission. The University is committed to attracting and retaining employees with varying identities and backgrounds. The University of Minnesota provides equal access to and opportunity in its programs, facilities, and employment without regard to race, color, creed, religion, national origin, gender, age, marital status, disability, public assistance status, veteran status, sexual orientation, gender identity, or gender expression. To learn more about diversity at the U: http://diversity.umn.edu. Background Check Information Any offer of employment is contingent upon the successful completion of a background check. Our presumption is that prospective employees are eligible to work here. Criminal convictions do not automatically disqualify finalists from employment. About the U of M: The University of Minnesota, Twin Cities (UMTC) The University of Minnesota, Twin Cities (UMTC), is among the largest public research universities in the country, offering undergraduate, graduate, and professional students a multitude of opportunities for study and research. Located at the heart of one of the nation's most vibrant, diverse metropolitan communities, students on the campuses in Minneapolis and St. Paul benefit from extensive partnerships with world-renowned health centers, international corporations, government agencies, and arts, nonprofit, and public service organizations.[Click Here to Access the Original Job Post]