Job ID: 81726
Job date: 2017-02-16
End Date:
Company : North Carolina State University. Country : Role : Research Scientist
Job date: 2017-02-16
End Date:
Company : North Carolina State University. Country : Role : Research Scientist
Job Description:
The Research Scholar position will work as a member of project “Development and validation of advanced methods for detection and identification of plant quarantine pathogens”. The position will work under the general supervision of a Team/Project Leader to support the APHIS PPQ CPHST Beltsville Laboratory projects on molecular and biochemical methods for the diagnosis of regulatory plant pests/pathogens. The position will be part of a growing lab that handles large amounts of data. The position is based at the CPHST Beltsville Laboratory in Beltsville, MD. U.S. citizenship or permanent residency is required. The position will perform bioinformatic analyses on next generation sequencing data (DNA-seq, RNA-seq, metagenomics) by developing custom analytical tools/pipelines and using open source software. Among the primary goals, is the identification and characterization of plant pathogens of quarantine and regulatory significance. This position is located in Beltsville, MD. Other Work/Responsibilities Training in bioinformatics, development of custom pipelines and bioinformatics SOPs may be required by the supervisor. Complete all required technical, EEO and work safety training. Minimum Education/Experience: -PhD or equivalent doctoral degree in plant pathology, bioinformatics, or related field. -Strong experience in one or more of the following areas: next generation sequencing-based large data analysis, molecular biology, microbiology and biology. Departmental Required Skills: -Documented experience on next generation sequencing, genotyping, construction of DNA/RNA libraries and computational biology/bioinformatics. -Proficient in genome and transcriptome assembly, annotation, variant detection and comparative genomic analyses. -Demonstrated programming and scripting skills in several of the following languages: R, Python, Java, Perl, C++. The candidates must be comfortable setting up, working and maintaining a Linux/Unix environment. -Attention to details, knowledge of GLP and QMS, SOP instructions and excellent technical skills. -Ability to plan and follow planned activities independently. -Working knowledge of Microsoft Office, good written and oral communication skills. -Basic system administration skills. Preferred Experience, Skills, Training/Education -Knowledge, background, or experience in molecular biology and microbiology. -Knowledge of plant pathogen biology and/or detection & diagnostics of pathogens (Oomycetes, fungi, bacteria, virus or nematodes) and experience with sequence analysis.
Additional Info:
The United States Department of Agriculture (USDA)-Animal and Plant Health Inspection Service (APHIS)-Plant Protection and Quarantine (PPQ)-Science & Technology (S&T)-Center for Plant Health Science and Technology (CPHST) Beltsville Laboratory mission is to provide federal confirmatory diagnostics for regulatory plant pathogens; develop and validate advanced molecular and serological detection methods for pathogens that threaten U.S. agriculture; evaluate applicability of new, state-of-the-art technologies and methodologies in support of the agency efforts. Applicant required documents: Cover Letter, CV, Unofficial Transcripts (required in application), Official Transcripts (required by finalist), Contact Information for References. AA/EOE: NC State University is an equal opportunity and affirmative action employer. All qualified applicants will receive consideration for employment without regard to race, color, national origin, religion, sex, gender identity, age, sexual orientation, genetic information, status as an individual with a disability, or status as a protected veteran. Individuals with disabilities requiring disability-related accommodations in the application and interview process, please call 919-515-3148. Final candidates are subject to criminal & sex offender background checks. Some vacancies also require credit or motor vehicle checks. If highest degree is from an institution outside of the U.S., final candidates are required to have their degree verified at www.wes.org. Degree must be obtained prior to start date. NC State University participates in E-Verify. Federal law requires all employers to verify the identity and employment eligibility of all persons hired to work in the United States.[Click Here to Access the Original Job Post]
The Research Scholar position will work as a member of project “Development and validation of advanced methods for detection and identification of plant quarantine pathogens”. The position will work under the general supervision of a Team/Project Leader to support the APHIS PPQ CPHST Beltsville Laboratory projects on molecular and biochemical methods for the diagnosis of regulatory plant pests/pathogens. The position will be part of a growing lab that handles large amounts of data. The position is based at the CPHST Beltsville Laboratory in Beltsville, MD. U.S. citizenship or permanent residency is required. The position will perform bioinformatic analyses on next generation sequencing data (DNA-seq, RNA-seq, metagenomics) by developing custom analytical tools/pipelines and using open source software. Among the primary goals, is the identification and characterization of plant pathogens of quarantine and regulatory significance. This position is located in Beltsville, MD. Other Work/Responsibilities Training in bioinformatics, development of custom pipelines and bioinformatics SOPs may be required by the supervisor. Complete all required technical, EEO and work safety training. Minimum Education/Experience: -PhD or equivalent doctoral degree in plant pathology, bioinformatics, or related field. -Strong experience in one or more of the following areas: next generation sequencing-based large data analysis, molecular biology, microbiology and biology. Departmental Required Skills: -Documented experience on next generation sequencing, genotyping, construction of DNA/RNA libraries and computational biology/bioinformatics. -Proficient in genome and transcriptome assembly, annotation, variant detection and comparative genomic analyses. -Demonstrated programming and scripting skills in several of the following languages: R, Python, Java, Perl, C++. The candidates must be comfortable setting up, working and maintaining a Linux/Unix environment. -Attention to details, knowledge of GLP and QMS, SOP instructions and excellent technical skills. -Ability to plan and follow planned activities independently. -Working knowledge of Microsoft Office, good written and oral communication skills. -Basic system administration skills. Preferred Experience, Skills, Training/Education -Knowledge, background, or experience in molecular biology and microbiology. -Knowledge of plant pathogen biology and/or detection & diagnostics of pathogens (Oomycetes, fungi, bacteria, virus or nematodes) and experience with sequence analysis.
Requeriments :
Skills :
- Biology
- Lunix/Unix
- Microbiology
- molecular biology
- Next Generation Sequencing
- Pathology
- Programing in C++
- Programing in Python
- Programing Skills
- Programming in Java
- Programming in PERL
- Programming in R
Areas :
Additional Info:
The United States Department of Agriculture (USDA)-Animal and Plant Health Inspection Service (APHIS)-Plant Protection and Quarantine (PPQ)-Science & Technology (S&T)-Center for Plant Health Science and Technology (CPHST) Beltsville Laboratory mission is to provide federal confirmatory diagnostics for regulatory plant pathogens; develop and validate advanced molecular and serological detection methods for pathogens that threaten U.S. agriculture; evaluate applicability of new, state-of-the-art technologies and methodologies in support of the agency efforts. Applicant required documents: Cover Letter, CV, Unofficial Transcripts (required in application), Official Transcripts (required by finalist), Contact Information for References. AA/EOE: NC State University is an equal opportunity and affirmative action employer. All qualified applicants will receive consideration for employment without regard to race, color, national origin, religion, sex, gender identity, age, sexual orientation, genetic information, status as an individual with a disability, or status as a protected veteran. Individuals with disabilities requiring disability-related accommodations in the application and interview process, please call 919-515-3148. Final candidates are subject to criminal & sex offender background checks. Some vacancies also require credit or motor vehicle checks. If highest degree is from an institution outside of the U.S., final candidates are required to have their degree verified at www.wes.org. Degree must be obtained prior to start date. NC State University participates in E-Verify. Federal law requires all employers to verify the identity and employment eligibility of all persons hired to work in the United States.[Click Here to Access the Original Job Post]