Job Description:
Computational-biologists/bioinformaticists in a large-scale "production" setting to deploy, maintain and evolve the bioinformatics framework for a high-throughput, ultra-rapid turnaround time wholegenome sequencing based clinical setting. Part of a team that'll build the infrastructure ground up using the latest and greatest of the technologies in infrastructure, data storage and analytics, with a strong focus on automation and integration. The environment is highly cross-functional, with a rich medical research heritage and multitude of collaborations with the biotech industry, academic institutions and federal programs. MINIMUM QUALIFICATIONS:
Additional Info:
EEO/AA/Minorities/Females/Disabled/Veterans [Click Here to Access the Original Job Post]
Computational-biologists/bioinformaticists in a large-scale "production" setting to deploy, maintain and evolve the bioinformatics framework for a high-throughput, ultra-rapid turnaround time wholegenome sequencing based clinical setting. Part of a team that'll build the infrastructure ground up using the latest and greatest of the technologies in infrastructure, data storage and analytics, with a strong focus on automation and integration. The environment is highly cross-functional, with a rich medical research heritage and multitude of collaborations with the biotech industry, academic institutions and federal programs. MINIMUM QUALIFICATIONS:
- Bachelor's Degree
- Experience analyzing next-gen sequencing data (Illumina whole genomes or exomes): BCL to annotated variants
- Experience developing and maintaining pipelines for 24x7 automated bioinformatics analyses
- Experience working with and understanding of open source NGS tools like bwa, samtools, vcftools, picard, GATK, Freebayes, ANNOVAR, VEP, etc.
- Experience with unix/linux operating system and software development using any of Ruby, Python, Perl, Bash
- Experience working with HPC scheduling systems such as Moab, TORQUE, LSF, OpenGrid Engine, etc.
- Experience in CNV and SV calling
- Previous experience working in a CAP/CLIA environment
- Previous experience with cloud-based development or analysis and performing benchmarking of bioinformatics tools
- Experience with Docker or other container technologies
- Experience integrating bioinformatics pipeline with other information systems
- Experience automating next-gen sequencing pipeline
- Experience with project management
- Experience offering technical support to upstream laboratory or downstream interpretation personnel
Requeriments :
Skills :
- Bioinformatics
- HPC
- Lunix/Unix
- Next Generation Sequencing
- Programing in Python
- Programming in PERL
- Software Design
Areas :
Additional Info:
EEO/AA/Minorities/Females/Disabled/Veterans [Click Here to Access the Original Job Post]