Senior Software Engineer, Genomics

Job ID:
Job date: 2018-01-18
End Date:

Company : Counsyl 

Country :

Role : Technician 


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Job Description:
Don't be intimidated if you don't have a genomics background; solving these problems fundamentally requires software solutions. We're looking for the best and brightest software engineers — strong generalists with solid CS fundamentals and practical software engineering intuition — to help us scale up genomics to billions of users.

If you're interested in working with modern web technologies, brilliant engineers and products that influence millions of people’s lives, this is the place for you.

What You'll Do:

  • Develop web apps for lab directors, curators, and genetic counselors to work with our data in scalable and efficient ways.
  • Design and implement genetic risk calculations as well as genetic reports that are clear and easy to understand.
  • Develop ETL pipelines for tracking external datasets (allele frequencies, clinical data) and combining with our internal data and systems.
  • Design and implement algorithms for classifying mutations and summarizing our sample data.
  • Our tech stack: Python, Django, Postgres, Celery, Docker, Luigi, and Jupyter/matplotlib.
  • Our backgrounds: web technologies, computational biology, computer science, genetics, math.
About You:
  • Experience with Python/Django (or another similar framework)
  • Work demonstrated by a GitHub account, personal web page, or prior experience.
  • Relational database systems experience, such as PostgreSQL
  • Experience with Unix, Git, and other command line tools
  • BS, MS or PhD in Computer Science or equivalent experience


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Additional Info:
Counsyl's products help people make life changing decisions - we’ve revolutionized the lab and created a one of a kind platform that gives people access to critical health information at key junctures in their lives - and it all uses Python!

The vast majority of our operations are powered by our own custom-built infrastructure on a Python/Django/Postgres stack, from ordering to lab processing to billing. We're building new tools, new workflows, and new infrastructure to solve the challenging problems of a technology startup involved with not just bits, but also interconnected physical components like lab robotics and patient samples.

Counsyl is a health technology company that offers DNA screening for diseases that can impact men, women and their children. The Counsyl philosophy is simple: screen for diseases where advanced knowledge makes a difference in health outcomes, whether it’s changing a behavior, pursuing preventative measures, or simply preparing for what lies ahead.

The Counsyl team includes an accomplished group of problem-solvers — top engineers, scientists, and designers — who are taking the lead on building the modern clinical laboratory. Scientific rigor, custom robotics, and software are at the heart of every Counsyl product, resulting in better, faster and more affordable screens that are broadly accessible. Beyond the laboratory, Counsyl offers doctors and patients a technology platform for results delivery in real time, with on-demand access to board-certified genetic counselors.

Counsyl has screened more than 750,000 patients and served more than 10,000 health care professionals in its CLIA-certified, CAP-accredited and NYS CLEP-permitted clinical laboratory. The company has raised a total of $102 million and is privately backed by Pilot Growth Equity, Goldman Sachs Asset Management, Founders Fund, Felicis Ventures, David Drummond, and other high profile investors.

Counsyl does not accept unsolicited resumes. Further, any resumes submitted to us without a signed contract will become the property of Counsyl, Inc. Should we require assistance on this, or any other search, we will initiate contact from the recruiting team.

[Click Here to Access the Original Job Post]