PORECAMP USA |
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Timetable
Monday June 5th
Starts | Ends | Activity | Location |
09:00 | Van pick up | Lot 30a | |
09:00 | 10:30 | Registration | Veterinary Medicine Building entrance |
10:30 | 11:30 | Vet School Tour | Vet School |
11:30 | 13:00 | Lunch – Jason’s Deli – Talk by (Mick Watson) |
Room 101B VENI |
13:00 | 17:30 | Lectures PoreCamp | Room 101B VENI |
17:30 | 18:30 | PoreCampUSA Reception Cash Bar |
Veterinary Medicine Building 3rd floor |
18:30 | 19:30 | Dinner | VBM3rd floor |
19:30 | 20:00 | Panel Discussion | VBM3rd floor |
Tuesday June 6th
Starts | Ends | Brisket | Ribs | Whole Hog | Location |
08:00 | Van Pick Up | Lot 30a | |||
08:00 | 12:00 | Bioinformatics | Library Prep | Sequencing | TxGen |
12:00 | 13:30 | Lunch – Pizza Understanding event calling and MinION data (Matt Loose) |
TxGen | ||
13:30 | 18:30 | Bioinformatics | Library Prep | Sequencing | TxGen |
Wednesday June 7th
Starts | Ends | Brisket | Ribs | Whole Hog | Location |
08:00 | Van Pick Up | Lot 30a | |||
08:30 | 12:00 | Library Prep | Sequencing | Bioinformatics | TxGen |
12:00 | 13:30 | Lunch – Free Birds MinION Running (John Tyson) |
TxGen | ||
13:30 | 18:30 | Library Prep | Sequencing | Bioinformatics | TxGen |
Thursday June 8th
Starts | Ends | Brisket | Ribs | Whole Hog | Location |
08:00 | Van Pick Up | Lot 30a | |||
08:30 | 12:00 | Sequencing | Bioinformatics | Library Prep | TxGen |
12:00 | 13:30 | Lunch – Blue Backers Deploying a portable nanopore sequencing system (Josh Quick) |
TxGen | ||
13:30 | 18:30 | Sequencing | Bioinformatics | Library Prep | TxGen |
Friday June 9th
Starts | Ends | Activity | Location |
8:00 | Van Pick Up | Lot 30a | |
08:30 | 12:00 | Final Day of PoreCamp | TxGen |
12:00 | 15:00 | Take Bus to Jester King – Box Lunch | On the Road Again |
15:00 | 21:00 | OnSite Sequencing at Jester King – Dinner from Salt Lick (a) | Jester King – Austin |
21:00 | 23:30 | Head Back to College Station | Lot 30a/TxGen |
(a) The plan is we’ll order BBQ from there and then bring back to Jester king to eat.
Notes:
9:00-10:30am Monday
Monday meeting location – Registration front entrance lobby
Address: 660 Raymond Stotzer Parkway
TxGen
AgriLife Genomics and Bioinformatics Service
101 Gateway, Suite A
College Station TX 77845
Lab Phone: (979) 862-2143
If you are going south on Highway 6 (from TAMU), take the Nantucket exit and make a U-turn under the bridge to get onto the northbound HW6 feeder road. From the feeder road make a right turn into our complex, take the right immediately after passing the business park entrance (Gateway Blvd). We are located in Suite A of this building, which is on the right hand side.
Please park in the front of the building.
What to bring
- Yourself
- A modern laptop (this will not be used for MinIon sequencing, but rather to connect to resources to analyze MinIon data). Just in case, please also bring an Ethernet cable and adaptor if required.
- Your favorite lab coat if you have one (we will be able to provide one if needed)
- Pens, markers and something suitable for use as a lab-book
- DNA to registration (if you have some you want to work with)
Contact information
Charlie Johnson: Cell: +1 979 436-1485
Rick Metz (man with the van): +1 979 777-7518
Gail Martian: +1 979 255-2086 Office: 979-862-3262
Sponsors
Acknowledgements
- This work used the Extreme Science and Engineering Discovery Environment (XSEDE), which is supported by National Science Foundation grant number ACI-1548562 [1].
- We would like to thank the Texas Advanced Computing Power, https://www.tacc.utexas.edu/, CyVerse, http://www.cyverse.org/, and Jetstream (https://jetstream-cloud.org/) for allocations, donated capacity, and technical assistance.
[1] John Towns, Timothy Cockerill, Maytal Dahan, Ian Foster, Kelly Gaither, Andrew Grimshaw, Victor Hazlewood, Scott Lathrop, Dave Lifka, Gregory D. Peterson, Ralph Roskies, J. Ray Scott, Nancy Wilkins-Diehr, “XSEDE: Accelerating Scientific Discovery“, Computing in Science & Engineering, vol.16, no. 5, pp. 62-74, Sept.-Oct. 2014, doi:10.1109/MCSE.2014.80